Package: Relatedness 2.0
Relatedness: Maximum Likelihood Estimation of Relatedness using EM Algorithm
Inference of relatedness coefficients from a bi-allelic genotype matrix using a Maximum Likelihood estimation, Laporte, F., Charcosset, A. and Mary-Huard, T. (2017) <doi:10.1111/biom.12634>.
Authors:
Relatedness_2.0.tar.gz
Relatedness_2.0.zip(r-4.5)Relatedness_2.0.zip(r-4.4)Relatedness_2.0.zip(r-4.3)
Relatedness_2.0.tgz(r-4.4-x86_64)Relatedness_2.0.tgz(r-4.4-arm64)Relatedness_2.0.tgz(r-4.3-x86_64)Relatedness_2.0.tgz(r-4.3-arm64)
Relatedness_2.0.tar.gz(r-4.5-noble)Relatedness_2.0.tar.gz(r-4.4-noble)
Relatedness_2.0.tgz(r-4.4-emscripten)Relatedness_2.0.tgz(r-4.3-emscripten)
Relatedness.pdf |Relatedness.html✨
Relatedness/json (API)
| # Install 'Relatedness' in R: |
| install.packages('Relatedness', repos = c('https://fabienlaporte.r-universe.dev', 'https://cloud.r-project.org')) |
- Cross - Crossing matrix
- Delta - List of Relatedness Coefficients
- Frequencies - Allele Frequencies
- Genotype - Genotype Matrix
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:12a1f21fb3. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 12 2024 |
| R-4.5-win-x86_64 | OK | Sep 12 2024 |
| R-4.5-linux-x86_64 | OK | Sep 12 2024 |
| R-4.4-win-x86_64 | OK | Sep 12 2024 |
| R-4.4-mac-x86_64 | OK | Sep 12 2024 |
| R-4.4-mac-aarch64 | OK | Sep 12 2024 |
| R-4.3-win-x86_64 | OK | Sep 12 2024 |
| R-4.3-mac-x86_64 | OK | Sep 12 2024 |
| R-4.3-mac-aarch64 | OK | Sep 12 2024 |
Exports:BoucleEMaccRelCoefRelCoefLineRelComb
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Maximum Likelihood Estimation of Relatedness using EM Algorithm | Relatedness-package Relatedness |
| C code for the EM | BoucleEMacc |
| Crossing matrix | Cross |
| List of Relatedness Coefficients | Delta |
| Allele Frequencies | Frequencies |
| Genotype Matrix | Genotype |
| Relatedness Coefficients Estimation for individuals | RelCoef |
| Relatedness Coefficients Estimation for Lines | RelCoefLine |
| Computation of Linear Combination of Relatedness Coefficients | RelComb |
